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New Jersey has indicated that they will continue to treat the income as New York income if that’s what the employer does.
“New Jersey sourcing rules dictate that income is sourced based on where the service or employment is performed based on a day’s method of allocation. However, during the temporary period of COVID-19 pandemic, wage income will continue to be sourced as determined by the employer in accordance with the employer’s jurisdiction.”
Telecommuter COVID-19 Employer and Employee FAQ
Scroll down to “Employer Withholding Tax.”